This isn't a stalling problem, it isn't a case of pulling away without enough revs. That's not to say you can't stall an MT07 like that, but this is a different problem.
It's nothing to do with the clutch, or whether it's in gear or not. What is happening is that the moment you open the throttle, there is some kind of fuel supply issue, and under certain very specific circumstances, it causes the engine to die.
You can actually catch it sometimes. You'll feel it briefly misfire, and can give it a blip to stop it.
Riding style probably makes a difference. If your style is to give it a good handful as you pull away, you'll probably never have it happen. If you're gentle on the throttle, and are riding say in heavy traffic a lot, you're more likely to see it.
In the case of the MT03/XT660 (both of them have a reputation for it), it used to happen either when pulling away from the lights, or when coming to a stop, changing from 2nd to 1st, where you probably give the throttle a little blip.
On the MT07 I have only heard of ti happening when going to pull away.
Having said all this, mine hasn't done it in the last 2 weeks, having done it 2 or 3 times in the first week I had it, so it's possible it's just an issue on really new bikes.